Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDT--------HVEIDFMVVSSYHGGTTSSGEVKILKDVD-TNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
4RAO Chain:A ((30-209))
----DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSRSIPMTVDFIRLK-------------------LSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAK
General information:
TITO was launched using:
RESULT:
Template:
4RAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119344 for 1174 contacts (-101.7/contact) +
2D Compatibility (PS) -16802 + (NN) -6022 + (LL) 892
1D Compatibility (HY) -19200 + (ID) 2600
Total energy: -163076.0 ( -138.91 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_4RAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RAO-query.scw
PDB file :
Tito_Scwrl_4RAO.pdb
: