Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHYQTIIIGAGAAGIGFGSAMQRLG--LTNFLIIEKGHIGESFL-RWPRTTQFITPSFTTNGFGFPDLNAVIPDTSPAFSFEKEHLSGVEYARYLQLVAAHYNLPIQNETSVLSIDKRDSLFVIKT----SKGDFSADYLIMATGEFQNPNTIDIKGADL--GMHYGQVDNFHI-------KSDNPFIIIGGNESACDALTHLVYLGNQVELYTDTFGRKESNPDPSISLSPLTKERLKHIQDHKKEYYSISEGKKAIEIKQIG-------------------KQYQVTFDDGSTAESFHKPILSTGFLNTCHLIDGIA-LFEYDKNQLPIVTEDDESTIVNNCFLIGPSLRQRDTI------FCYIYKFRQRFVPVINHIAQREGIILDEDTLEFFKENQMYLDNLACCDVNCDC |
| 3NTD Chain:A ((1-338)) | --MKKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVSFANCGLPYH---IS--------------------------GEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA--APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-------VDREMAGFAHQAIRD--QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE-LLETDLLIMAIGVRPETQL--ARDAGLAIGELGGIKVNAMMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167317 for 2449 contacts (-68.3/contact) +
2D Compatibility (PS) -31888 + (NN) -8293 + (LL) 1248
1D Compatibility (HY) -4000 + (ID) 2200
Total energy: -212450.0 ( -86.75 by residue)
QMean score : 0.407
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