Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTNKLTSFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLVNELISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVHIKEAKRLIGGLS-LQKDLLYELCDLIAARDH
5E8K Chain:A ((9-303))--FKFMSYMVNKAKSVNKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPPERILKTVQEMVKAV--EGLVAGQQADLAG----TGLEHLEFIHIHKTAALLEAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLD-------------------KLTYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNR--


General information:
TITO was launched using:
RESULT:

Template: 5E8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1300 -123200 -94.77 -461.42
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -94.77
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.442

(partial model without unconserved sides chains):
PDB file : Tito_5E8K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5E8K-query.scw
PDB file : Tito_Scwrl_5E8K.pdb: