Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLT-ELVSL---QSQHPDFLRLFYLLSMERS--QDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGKADLVVAELTAFAVALSDGVYFAGHLEP-DTTDVERMYRRLRQALEALIPVLLEET
1VI0 Chain:A ((8-196))
-------------PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATA----KEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLD--VR----LARQMIFGTIDETVTTWVMNDQKY-DLVALSNSVLELLVSGIHNK----
General information:
TITO was launched using:
RESULT:
Template:
1VI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62358 for 1266 contacts (-49.3/contact) +
2D Compatibility (PS) -19626 + (NN) -6459 + (LL) 2096
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -94397.0 ( -74.56 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1VI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI0-query.scw
PDB file :
Tito_Scwrl_1VI0.pdb
: