Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAK-VVGLDTAIAHGMLTMGIGGGYVTSWVGD--PGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGK---KIFGRAIASAKLA
3KHP Chain:A ((191-305))
-------------------DMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPG-----ETLSTVIWRTEP----GRAVFRTEVAG---EARVVLDDGA------
General information:
TITO was launched using:
RESULT:
Template:
3KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78512 for 729 contacts (-107.7/contact) +
2D Compatibility (PS) -10746 + (NN) -231 + (LL) 1172
1D Compatibility (HY) -800 + (ID) 1250
Total energy: -90367.0 ( -123.96 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_3KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KHP-query.scw
PDB file :
Tito_Scwrl_3KHP.pdb
: