Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGRRAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTSTKDLADAFAFNVGTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAARGFAAYGTAKAALAHYTRLAALDLCPR-VRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
4BMN Chain:C ((5-251))
----MYRLLNKTAVITGGNSGIGLATAKRFVAEGAYVFIVGRRRKELEQAAAEI---GRNVTAVKADVTKLEDLDRLYAIVREQRGSIDVLFANSGAIEQKTLEEITPEHYDRTFDVNVRGLIFTVQKALPLLRD---GGSVILTSSVAGVLGLQAHDTYSAAKAAVRSLARTWTTELKGRSIRVNAVSPGAID-----------ELRAKFAAATPLGRVGRPEELAAAVLFLASDDSSYVAGIELFVDGGLT-----------
General information:
TITO was launched using:
RESULT:
Template:
4BMN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138757 for 1981 contacts (-70.0/contact) +
2D Compatibility (PS) -24903 + (NN) -7143 + (LL) 1920
1D Compatibility (HY) -12000 + (ID) 4600
Total energy: -185483.0 ( -93.63 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_4BMN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMN-query.scw
PDB file :
Tito_Scwrl_4BMN.pdb
: