Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHG----STFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADL------IGDGAVALRGLGWWADVDI-------ERALAIGTDMSMRLADRGVLLKDT----YGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
1D7U Chain:A ((240-432))
LILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH--ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD----VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA--
General information:
TITO was launched using:
RESULT:
Template:
1D7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109613 for 1211 contacts (-90.5/contact) +
2D Compatibility (PS) -18307 + (NN) -2854 + (LL) -60
1D Compatibility (HY) -12000 + (ID) 3350
Total energy: -146184.0 ( -120.71 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_1D7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D7U-query.scw
PDB file :
Tito_Scwrl_1D7U.pdb
: