Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA
1F3F Chain:C ((9-138))
--ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPL-ASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWF---
General information:
TITO was launched using:
RESULT:
Template:
1F3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86154 for 1028 contacts (-83.8/contact) +
2D Compatibility (PS) -13957 + (NN) -4915 + (LL) 212
1D Compatibility (HY) -12400 + (ID) 3500
Total energy: -120714.0 ( -117.43 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1F3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3F-query.scw
PDB file :
Tito_Scwrl_1F3F.pdb
: