Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLHTNHGVITLKLDEEKAPETAANFKEYVKSGHYDNTVFHRVINNFMIQGGGFEPGMKQKPT--RAPIKNEANNGLTNK-VGSIAMARTMDPHSASAQFFINVADNDFLNHTAPTTQGWGYAVFGEVVEGMDVVNKIKGVATTM-RSGHQDVPAEDVIIEKAEIVEE
1ZKC Chain:A ((21-176))
YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMA-NSGPNSNRSQFFITFRSCAYLDKKH--------TIFGRVVGGFDVLTAMENVESDPKT----DRPKEEIRIDATTVFVD
General information:
TITO was launched using:
RESULT:
Template:
1ZKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53574 for 1180 contacts (-45.4/contact) +
2D Compatibility (PS) -15748 + (NN) -1669 + (LL) 52
1D Compatibility (HY) -12000 + (ID) 2550
Total energy: -85489.0 ( -72.45 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKC-query.scw
PDB file :
Tito_Scwrl_1ZKC.pdb
: