Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDKSVLSCRNLSKSYDEGPQSVQVLSGVELNLLPGERVAIVGSSGSGKSTLLNMLGGLDTPSAGSVWLAGEELSALNETARGLLRNRALGFVYQFHHLLP----EFTALENVCMPL--LIGRTPIAEARQRAAELLERVGLGHRLSHKPAELSGGERQRVAIARALVNRPQLVLLDEPTGNLDQHTAQGIQELMLELSRSLQTSFLVVTHDLQLAGHMDRILRLEEGRLIAA
2FF7 Chain:A ((8-222))
------ITFRNIRFRYK--PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLR-RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIAHRLSTVKNADRIIVMEKGKIV--
General information:
TITO was launched using:
RESULT:
Template:
2FF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126670 for 1603 contacts (-79.0/contact) +
2D Compatibility (PS) -22377 + (NN) -6025 + (LL) 1080
1D Compatibility (HY) -18800 + (ID) 3700
Total energy: -176492.0 ( -110.10 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2FF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FF7-query.scw
PDB file :
Tito_Scwrl_2FF7.pdb
: