Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLA-GKA--IDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAA-ENAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
3UWV Chain:B ((9-253))
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFED-NGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDF---------
General information:
TITO was launched using:
RESULT:
Template:
3UWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141077 for 2014 contacts (-70.0/contact) +
2D Compatibility (PS) -26790 + (NN) -13460 + (LL) 628
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -202849.0 ( -100.72 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3UWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWV-query.scw
PDB file :
Tito_Scwrl_3UWV.pdb
: