Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRKLAAVSLLSLLSAPLLAAECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK
3JT2 Chain:B ((1-128))
--------------------AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHSWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALLKGTLTLK
General information:
TITO was launched using:
RESULT:
Template:
3JT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69232 for 983 contacts (-70.4/contact) +
2D Compatibility (PS) -13252 + (NN) -1962 + (LL) 2324
1D Compatibility (HY) -16800 + (ID) 6300
Total energy: -105222.0 ( -107.04 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_3JT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JT2-query.scw
PDB file :
Tito_Scwrl_3JT2.pdb
: