Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTKKELSQYLLQSLNMGLGALMQGETSYTNSFDCKIMEEGFLFLPRLPAGYIIDDELYQKIFLIANASLFPRYTLLKQNSAYFMALDTEDIHVQRGLFFPWKEGVSERLIISDLEDFASSQKETLIPIMKNLSLDFNKVNHI-AIAGNSGSGKSYALTYFLSLLKGIS---------
1OQV Chain:A ((22-192))
DSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSL--GKISSDEAKN-PFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAG----GAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFGNS
General information:
TITO was launched using:
RESULT:
Template:
1OQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57602 for 1235 contacts (-46.6/contact) +
2D Compatibility (PS) -16449 + (NN) -2578 + (LL) 404
1D Compatibility (HY) 2400 + (ID) 1500
Total energy: -75325.0 ( -60.99 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1OQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQV-query.scw
PDB file :
Tito_Scwrl_1OQV.pdb
: