Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSK--VPYNKEYKDLDTKKHC
4HG9 Chain:A ((1-115))
----------------------HLLQFRKMIKKM-TGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKV---TGC-----DPKWDDYTYSWKDGDIVCG-GDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDI-LC
General information:
TITO was launched using:
RESULT:
Template:
4HG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48595 for 840 contacts (-57.9/contact) +
2D Compatibility (PS) -12317 + (NN) -9424 + (LL) 3368
1D Compatibility (HY) -9600 + (ID) 2350
Total energy: -78918.0 ( -93.95 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_4HG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HG9-query.scw
PDB file :
Tito_Scwrl_4HG9.pdb
: