Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2J1L Chain:A ((32-210))
VRSVKVVLVGDGGCGKTSLLMVFAD-------TPTVFERYMVNLQVKGKPVHLHIWDT---------------DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS------------
General information:
TITO was launched using:
RESULT:
Template:
2J1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137503 for 1252 contacts (-109.8/contact) +
2D Compatibility (PS) -16846 + (NN) -4640 + (LL) 1340
1D Compatibility (HY) -17600 + (ID) 3250
Total energy: -178499.0 ( -142.57 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2J1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J1L-query.scw
PDB file :
Tito_Scwrl_2J1L.pdb
: