Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLN---SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSY-NSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-QITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN
3S9C Chain:A ((1-227))
--------------------VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKIS--TTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPLICNGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN
General information:
TITO was launched using:
RESULT:
Template:
3S9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128264 for 1884 contacts (-68.1/contact) +
2D Compatibility (PS) -24338 + (NN) -12649 + (LL) 1480
1D Compatibility (HY) -17200 + (ID) 4550
Total energy: -185521.0 ( -98.47 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3S9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S9C-query.scw
PDB file :
Tito_Scwrl_3S9C.pdb
: