Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTSRLGVLLSLPVLLQLATGGS---SPRSGVLLRGCPTHCHCEPDGRMLLRVDCSDLGLSELPSNLSVFTSYLDL-------SMNNISQ---LLPNPLPSLRFLEELRLAGNALTYIPKGAFTGLYSLKVLMLQNNQL-RHVPTEALQNLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTEIPVQAFRSLSALQAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEFPTAI-RTLSNLKELGFHSNNIRSIPEKAFVGNPSLITIHFYDN--PIQFVGRSAFQHLPELRTLTLNGASQITEFPD--LTGTANLESLTLTGAQISSLPQTVCNQLPNLQVLDLSYNLLEDLPS--FSVCQKLQKIDLRHNEIYEIKVDTFQQLLSLRSLNLAWNKIAIIHPNAFSTLPSLIKLDLSSNLLSSFPITGLHGLTHLKLTGNHALQSLISSENFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDNSSMDDLHKKDAGMFQAQ-DERDLEDFLLDFEEDLKALHSVQCSPSPGPFKPCEHL--LDGWLIRIGVWTIAVLALTCNALVTSTVFRSPLYISPIKLLIGVIAAVNMLTGVSSAVLAGVDAFTFGSFARHGAWWENGVGCHVIGFLSIFASESSVFLLTLAALERGFSVKYSAKFETKAPFSSLKVIILLCALLALTMAAVPLLGGSKYGASPLCLPL------PFGEPSTMGYM-VALILLNSLCFLMMTIAYTKLYCNLDKGDLENIWDCSMVKHIALLLFTNCILNCPVAFLSFSSLINLTFISPEVIKFILLVVVPLP------ACLNPLLYILFNPHFKEDLVSLRKQTYVWTRSKHPSLMSINSDDVEKQSC-DSTQALVTFTSSSITYDLPPSSVPSPAYPVTESCHLSSVAFVPCL |
| 4LXR Chain:A ((1-773)) | --------SFGRDACSEMSIDGLCQCAPIMSEYEIICPAN-----AENPTFRLTIQPKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYL----------------GIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLR--AELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAF---------------------VSTNGLRHLHLDHNDI------DLQQPLLDIML-----------------------QTQINSPFGYMH----GLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDVNNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIE------PQTLICPLDFSKCPRGCNCHVR---------TYDKALVINC--HSGNLTHVPRLPNLHKNMQLMELHLENNTLLRLPSANTPGYESVTSLHLAG--NNLTSIDVDQLPTNLTHLDI--------------------------------SWNHLQMLNATVLGFLNWRSVKLSGNPWMCDCTAKPLLLFTQDNFE------------------------RIGDRNEMMCVNAPTRMVELSTNDI-----------------------------CP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -542856 for 5452 contacts (-99.6/contact) +
2D Compatibility (PS) -72971 + (NN) 1768 + (LL) 12920
1D Compatibility (HY) -48000 + (ID) 7850
Total energy: -656989.0 ( -120.50 by residue)
QMean score : 0.309
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