Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDT---------HLSIDFMDVSSYHGGTESTGEVQIIK-DLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
4RAN Chain:D ((30-204))
---DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRL--------------VIGG-----LTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHV----------
General information:
TITO was launched using:
RESULT:
Template:
4RAN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123887 for 1108 contacts (-111.8/contact) +
2D Compatibility (PS) -15289 + (NN) 2627 + (LL) 464
1D Compatibility (HY) -18800 + (ID) 2450
Total energy: -157335.0 ( -142.00 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4RAN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RAN-query.scw
PDB file :
Tito_Scwrl_4RAN.pdb
: