Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
2GLV Chain:F ((20-171))
-------LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVAFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
2GLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123717 for 1176 contacts (-105.2/contact) +
2D Compatibility (PS) -15886 + (NN) -2268 + (LL) 488
1D Compatibility (HY) -23600 + (ID) 7450
Total energy: -172433.0 ( -146.63 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2GLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLV-query.scw
PDB file :
Tito_Scwrl_2GLV.pdb
: