Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKHTGTIISISGFVLRIEFNESELPEIGFALEYHTHQGTYLAEVVQHTGINTVSAIAIGEVSGLARGTEVVNLGHPIEVPVGETVQGRMLNVYGKAIDGKPEPAAEVKWPIFRAQPLLRELDTNKEILYTGIKVIDLICPILKGGKTGLFGGAGVGKSVLMQELINNISML-GGNSVFTGVGERVREGIGLYKELEASGVL------PQTTVVLGQMNESPGVRMRVALTGLTIAEYLRDEEKKDVLLFIDNVFRFIQAGSEVSSLQGKIPITGGYQSTLSKEVGDFQDRIASTKNGSITSIQCVFLPADDIDDPSAVATFSHLDSTIVLERSIAALGIFPAVNPLQSFSRALNPTFVGERHYQLAVQVKFILQRYMELQEIINVLGMAELSDEDRKLVHRARKIRNFLSQPFYVSEKFTGTEGTFVEIEDLLGSIERILNGDYDERSERDFLFIGSYKDLK |
| 2JJ2 Chain:D ((14-469)) | ----TGRIVAVIGAVVDVQFDEG-LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JJ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254679 for 3912 contacts (-65.1/contact) +
2D Compatibility (PS) -48066 + (NN) -13154 + (LL) 724
1D Compatibility (HY) -41600 + (ID) 11700
Total energy: -368475.0 ( -94.19 by residue)
QMean score : 0.497
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