Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYTGTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHINFTG---TSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQE--LNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILDQPL--SHTEVIETTDQVRSTFLQYVKAIVAKIS
3FNQ Chain:C ((8-284))
-NIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKL-
General information:
TITO was launched using:
RESULT:
Template:
3FNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186226 for 2390 contacts (-77.9/contact) +
2D Compatibility (PS) -29078 + (NN) -10523 + (LL) 180
1D Compatibility (HY) -28800 + (ID) 6050
Total energy: -260497.0 ( -108.99 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3FNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNQ-query.scw
PDB file :
Tito_Scwrl_3FNQ.pdb
: