Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1N55 Chain:A ((6-251))
--QPIAAANWKCNGTTASIEKLVQVFNEHTISHD-VQCVVAPTFVHIPLVQAKLRNPKYVISAQNA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFRDIIDATR
General information:
TITO was launched using:
RESULT:
Template:
1N55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102093 for 2119 contacts (-48.2/contact) +
2D Compatibility (PS) -27050 + (NN) -13381 + (LL) 688
1D Compatibility (HY) -17200 + (ID) 5250
Total energy: -164286.0 ( -77.53 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1N55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N55-query.scw
PDB file :
Tito_Scwrl_1N55.pdb
: