Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIER-----GVPGGQMVNTAEVENYPGFD-SILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGK-EFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEE----LSGRGVSYCAVCDG--AFFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGK--KVTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDE-EMRTNLPGIFAAGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK
1VDC Chain:A ((4-325))--LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEI----------


General information:
TITO was launched using:
RESULT:

Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163831 for 2736 contacts (-59.9/contact) +
2D Compatibility (PS) -32408 + (NN) -2815 + (LL) 1516
1D Compatibility (HY) -22800 + (ID) 6700
Total energy: -227038.0 ( -82.98 by residue)
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_1VDC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VDC-query.scw
PDB file : Tito_Scwrl_1VDC.pdb: