Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIER-----GVPGGQMVNTAEVENYPGFD-SILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGK-EFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEE----LSGRGVSYCAVCDG--AFFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGK--KVTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDE-EMRTNLPGIFAAGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK |
1VDC Chain:A ((4-325)) | --LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEI---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163831 for 2736 contacts (-59.9/contact) +
2D Compatibility (PS) -32408 + (NN) -2815 + (LL) 1516
1D Compatibility (HY) -22800 + (ID) 6700
Total energy: -227038.0 ( -82.98 by residue)
QMean score : 0.498
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