Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELVNVSKKIQDK--LILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMT--LKKEVLGFIFQNYLLMENETVLENLSITGG--------ENRKLMIEHLEEVGMDESY---LAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR
2HYD Chain:B ((340-553))
-IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG---HNIKDFLTGSLRNQI-GLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-RTTLIVAHRLSTITHADKIVVIENGHI-
General information:
TITO was launched using:
RESULT:
Template:
2HYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104537 for 1579 contacts (-66.2/contact) +
2D Compatibility (PS) -21719 + (NN) -11738 + (LL) 820
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -157524.0 ( -99.76 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2HYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HYD-query.scw
PDB file :
Tito_Scwrl_2HYD.pdb
: