Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDT---------HVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
4RAN Chain:D ((30-209))
----DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRL--------------VIGG----LTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAK
General information:
TITO was launched using:
RESULT:
Template:
4RAN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122934 for 1176 contacts (-104.5/contact) +
2D Compatibility (PS) -16275 + (NN) -572 + (LL) 468
1D Compatibility (HY) -20000 + (ID) 2600
Total energy: -161913.0 ( -137.68 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_4RAN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RAN-query.scw
PDB file :
Tito_Scwrl_4RAN.pdb
: