Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIDVQHIDHSFTIGKKGRENEVPVLKDVSLSVAKGEIACIVGRSGSGKSTLLNLISGYISPTKGRIVINGTDVTGFNEKEWAQFRLDHFGFIFQSFQLIPGLTTYENVEMPLALKGIKPSERKQKVQDMLKRVGLENHAAHYPN-----------ELSGGQQQRVSIARALILNPSIILADEPTGSLDSETEHEVLELIQQLNRERGITFV-----IITHDDEVASI--GHSKFQLHDGVLKGGITVEV
2HYD Chain:A ((340-552))-IDIDHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR----NQIGLVQQDNILFSD-TVKENILLG------RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH------------------


General information:
TITO was launched using:
RESULT:

Template: 2HYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 942 -63002 -66.88 -323.09
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -66.88
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.473

(partial model without unconserved sides chains):
PDB file : Tito_2HYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2HYD-query.scw
PDB file : Tito_Scwrl_2HYD.pdb: