Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNVLQTTNLSKTYYSNKGTISYQALSAFDLSVSKGEFVGIMGPSGSGKTTLLNLLATIDKPTQGEMMINGIQPKTLKDQELAL----FRRRELGFVFQDFNLLDTLTIRENILLP---LALDKV----KLREMEARLDELADTLQIKHILDHRTYEVSGGQQQRAACARAIIHNPALILADEPTGNLDSKSAKQVMNTLAQLNEEKEATILLVTHDATAASFCKRIVFIKDGRFFSEIHRGTNRQVFYQSILDTLSVLGGDFHEFENYRP
2PMK Chain:A ((21-220))------------------------LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG--------HDLALADPNWLRRQVGVVLQD-NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT--IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ---------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 850 -19926 -23.44 -105.43
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -23.44
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.470

(partial model without unconserved sides chains):
PDB file : Tito_2PMK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PMK-query.scw
PDB file : Tito_Scwrl_2PMK.pdb: