Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNSRRRSLRWSWLLSVLAAVGLGLATAPAQAAPPALSQDRFADFPALPLDPSAMVAQVGPQVVNINTKLG---YNN-AVGAGTGIVIDP-NGVVLTNNHVIAGATDINAFSVGSGQTYGVDVVGYDRTQDVAVLQLRGAGGLPSAAIGG--GVAVGEPVVAMGNSGGQGGTPRAVPGRVVALGQTVQASDSLTGAEETLNGLIQFDAAIQPGDSGGPVVNGLGQVVGMNTAASDNFQLSQGGQGFAIPIGQAMAIAGQIRSGGGSPTVHIGPTAFLGLGVVDNN------------GNGARVQRVVGSAPAASLGISTGDVITAVDGAPINSATAMADALNGHHPGDVISVTWQTKSGGTRTGNVTLAEGPPA |
| 3PV2 Chain:A ((6-340)) | ------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPN--RKFESIGSGVIIDPNNGVIITNDHVIRNASLITV-TLQDGRRLKARLIGGDSETDLAVLKIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALK-----------------NFIQTDAAINPGNSGGALVNAKGELIGINTAIL-------VGIGFAIPINMVKDVAQQIIKFGSIH------RGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPL-TLSAVVTD---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -164944 for 2230 contacts (-74.0/contact) +
2D Compatibility (PS) -29537 + (NN) -17281 + (LL) 4836
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -230176.0 ( -103.22 by residue)
QMean score : 0.463
|
|
|