Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGK-KIFGRAIASAKLA
4OOB Chain:A ((151-258))
----------------AAVLRITPAKIRRYAAVGGDHNPIHTNPIAAKLFGFPTVIAHGMFTAAAVLANIEARFPD---AVRYSVRFAKPVLLP-----ATAGLYVAEGD-----GGWDLTLRNM-KGYPHLTATVR------
General information:
TITO was launched using:
RESULT:
Template:
4OOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59228 for 749 contacts (-79.1/contact) +
2D Compatibility (PS) -11389 + (NN) -3668 + (LL) 1308
1D Compatibility (HY) -3600 + (ID) 1500
Total energy: -78077.0 ( -104.24 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_4OOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OOB-query.scw
PDB file :
Tito_Scwrl_4OOB.pdb
: