Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGRRAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTSTKDLADAFAFNVGTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAARGFAAYGTAKAALAHYTRLAALDLCPR-VRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
4BMN Chain:B ((5-251))
----MYRLLNKTAVITGGNSGIGLATAKRFVAEGAYVFIVGRRRKELEQAAAEI---GRNVTAVKADVTKLEDLDRLYAIVREQRGSIDVLFANSGAIEQKTLEEITPEHYDRTFDVNVRGLIFTVQKALPLLRD---GGSVILTSSVAGVLGLQAHDTYSAAKAAVRSLARTWTTELKGRSIRVNAVSPGAID------------------AATPLGRVGRPEELAAAVLFLASDDSSYVAGIELFVDGGLT-----------
General information:
TITO was launched using:
RESULT:
Template:
4BMN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135749 for 1916 contacts (-70.9/contact) +
2D Compatibility (PS) -24184 + (NN) -7649 + (LL) 2616
1D Compatibility (HY) -11200 + (ID) 4450
Total energy: -180616.0 ( -94.27 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4BMN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMN-query.scw
PDB file :
Tito_Scwrl_4BMN.pdb
: