Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKI-AFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
7TIM Chain:B ((1-239))
-ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPE----NVEVVICPPATYLDYSVSLVK--KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEV--KDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEF--------------
General information:
TITO was launched using:
RESULT:
Template:
7TIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138983 for 2005 contacts (-69.3/contact) +
2D Compatibility (PS) -26584 + (NN) -17052 + (LL) 1288
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -201531.0 ( -100.51 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_7TIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-7TIM-query.scw
PDB file :
Tito_Scwrl_7TIM.pdb
: