Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRNRGFGRRELLVAMAMLVSVTGCARHASGARPASTTLPAGADLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVL--HQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGT-GDYGRANDIAVVWSPTG-VPYVVAVMSDRAGGGYDAEPREALLAEAATCVAGVLA |
| 3C5A Chain:A ((4-238)) | -------------------------------------------VAEPFAKLEQDFGGSIGVYAMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAG----LTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVW-PTGRAPIVLAVYT---------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3C5A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -118714 for 1962 contacts (-60.5/contact) +
2D Compatibility (PS) -25117 + (NN) -15755 + (LL) 4704
1D Compatibility (HY) -19200 + (ID) 6000
Total energy: -180082.0 ( -91.78 by residue)
QMean score : 0.552
|
|
|