Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLLADR-DSIFEYTYEDIVVKNYDPHPAIKAPVAV
1DNA Chain:B ((6-264))---YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCNVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI


General information:
TITO was launched using:
RESULT:

Template: 1DNA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30510 for 1978 contacts (-15.4/contact) +
2D Compatibility (PS) -26603 + (NN) -1207 + (LL) 120
1D Compatibility (HY) 10400 + (ID) 750
Total energy: -48550.0 ( -24.54 by residue)
QMean score : 0.099

(partial model without unconserved sides chains):
PDB file : Tito_1DNA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1DNA-query.scw
PDB file : Tito_Scwrl_1DNA.pdb: