Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARPLAMIAALGENRAIGIDNRLPWRLPADLKHFKAMTLGKPVIMGRKTWDSLGRPLPGRLNLVVSRQAGLALEGAEVFASLDAALARAEAWAQAEDADELMLIGGAQLYAEALPRAARLYLTRVGLAPEGDAFFPEIDGAAWR-LASSIEHAAADDAPAYAFEVWERR
4OR7 Chain:A ((2-159))
----ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPG-SDDRVQWVSSVE------EAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
General information:
TITO was launched using:
RESULT:
Template:
4OR7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87302 for 1158 contacts (-75.4/contact) +
2D Compatibility (PS) -16777 + (NN) -4728 + (LL) 1340
1D Compatibility (HY) -16000 + (ID) 3650
Total energy: -127117.0 ( -109.77 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_4OR7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OR7-query.scw
PDB file :
Tito_Scwrl_4OR7.pdb
: