Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRYALITGASSGIGLALAEALARRGRALILVARQRDALESIAYELAQRFGVEVLFRTCDLSEPLQLSGLLHELEQGERQIDLLVNNAGIG-TSGPFIDQEWAREQELIELNILALARLCHSLGARMAAQGGGQILNIASVAAFQPGAWMSNYYASKAYVLHFSEGLREELKERGVKVSVLCPGPTRTAFFREAGMRLGRLDRSKLMMTPEEVA-LLALRGLDKNRALIVPGWRNRLLALSPRLAPRWLVRRLAARINASAVPSAPRG
3RKR Chain:B ((30-251))
--QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVR-------------------AIEPDDIADVVALLATQADQSFISEVLVRPTL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134607 for 1667 contacts (-80.7/contact) +
2D Compatibility (PS) -22854 + (NN) -19037 + (LL) 4316
1D Compatibility (HY) -10800 + (ID) 3350
Total energy: -186332.0 ( -111.78 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3RKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKR-query.scw
PDB file :
Tito_Scwrl_3RKR.pdb
: