Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTSAA
3IU9 Chain:A ((44-286))
----VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLV-DNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT-------------
General information:
TITO was launched using:
RESULT:
Template:
3IU9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141185 for 2148 contacts (-65.7/contact) +
2D Compatibility (PS) -26662 + (NN) -8603 + (LL) 1104
1D Compatibility (HY) -20400 + (ID) 6000
Total energy: -201746.0 ( -93.92 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3IU9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IU9-query.scw
PDB file :
Tito_Scwrl_3IU9.pdb
: