Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPQIVILPHADHCPEGAVFEAKPGETILDAALRNGIEIEHACEKSCACTTCHVIVREGL-DSMEPSDELEDDMLDKAWGLEPDSRLSCQAVVAD--EDLVVEIPKYTINQVSEGH
2Y5C Chain:A ((5-107))
VVNVVFVDRSGQ---RIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKI---------
General information:
TITO was launched using:
RESULT:
Template:
2Y5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54173 for 732 contacts (-74.0/contact) +
2D Compatibility (PS) -11346 + (NN) -6559 + (LL) 456
1D Compatibility (HY) -8400 + (ID) 1950
Total energy: -81972.0 ( -111.98 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_2Y5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y5C-query.scw
PDB file :
Tito_Scwrl_2Y5C.pdb
: