Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNPQYPTRLPCGSRVLDLARPHVMGILNVTPDSFSDGGRYDRLDDALRHAERMVLEGATLIDVGGESTRPGARSVSPTEELERVAPVVERIARELDVVISVDTSTPAVMRETARLGAGLINDVRSLQ-RDGALDAAVDSGLAVCLMHMRGEPQT-MQDAPAYQDVVAEVGAFLQERVDACVAAGIDRERLLLDPGFGFAKTLEHNLVLFRHLQALHGLGLPLLVGVSRKSMIGKVLGR------EVDERLYGSLALAALALAKGARIIRVHDVAATVDVMRMISAVEMAD
1EYE Chain:A ((5-274))
--------------------PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAA-QGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAE
General information:
TITO was launched using:
RESULT:
Template:
1EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197054 for 2177 contacts (-90.5/contact) +
2D Compatibility (PS) -27441 + (NN) -18895 + (LL) 1204
1D Compatibility (HY) -16400 + (ID) 5200
Total energy: -263786.0 ( -121.17 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_1EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYE-query.scw
PDB file :
Tito_Scwrl_1EYE.pdb
: