Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFYDEKKTYQRIEERLEVISSFNAHNEHKNLQDEFKGAGISRRDLLKWAGMMSVTLALPASFAPLTLKAVEVANRLPVIWLHMAECTGCSESLLRSADPTIDSIIFDYINLEYHETIMVASGFQAEKSLHDAIEKHKNNYILMVEGGIP--QGTEYFLTQG-PNAETGAEECRKVAQHAAAIFAIGTCSSFGGVQAAYPNPSNAQPLHKIIDKPVINVPGCPPSEKNIVGNVLYYLMFGTLPKLDAYNRPSWAYGNRIHDLCERRGHFDAGEIVEHFGDENAKKGFCLYKMGCKRPYTFNNCSKLRFNSHTSWPIGAGHGCIGCSEPNFWDTMSPFEEPLANRSIKTAFDGLGADKVADKVGTTLLSATAIGIAAHALLSKAIKNKE |
| 4UD2 Chain:A ((5-262)) | -------------------------------------------------------------------------HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEG-KDGYYLVVEGGLPTIDGGQWGMVAGHPMIET----TKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKG-IPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFN-QVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145383 for 2160 contacts (-67.3/contact) +
2D Compatibility (PS) -27033 + (NN) -13458 + (LL) 9472
1D Compatibility (HY) -21600 + (ID) 6650
Total energy: -204652.0 ( -94.75 by residue)
QMean score : 0.401
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