Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMNTDETIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDMKPRFATLVDLYDSSDQLIDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRIFVMAKPGEFLLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPEDVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLARRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDP-VESEGISRAKKRSCEADLRIELFPFEQRYNINCNV-------ISSNTIYVLSKADDVINDHDI------KISDIDFLPVSILKGIGTEKLVSVIKEKVEEKFVYDRDVPVITRQRHRNCMQKAIEHLRRFNMNNPIELVSEDLRLAASELGVVTGIINVEEVLDDIFNNFCVGK
1MKY Chain:A ((2-166))-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATVLIVGRPNVGKSTLFNKLVK--------------DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPVDDEVFIDGRKYVFVDTAGLEKYSNYRV


General information:
TITO was launched using:
RESULT:

Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71414 for 967 contacts (-73.9/contact) +
2D Compatibility (PS) -14320 + (NN) -2428 + (LL) 17820
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -76542.0 ( -79.15 by residue)
QMean score : 0.511

(partial model without unconserved sides chains):
PDB file : Tito_1MKY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1MKY-query.scw
PDB file : Tito_Scwrl_1MKY.pdb: