Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILDENSPITVHYNHKMVSEEPMG----YVINSTVIWNAINNNFLNKLNIYSLHSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNV---KHELHH----QNLAVEQFFPGG---PFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEVKLDGERKSYPLSFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKF-LKKRFIRHAMGFV |
| 4GF7 Chain:A ((10-379)) | KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGA--GIYLWHNGLRVLEGLGALDDVLQGSHTP---------PTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG--RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPID---LEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--------GSSVEDALVAWETRIRPITDRCQALSGDYAANR---SLSKGNMFTPAALEAARYDPLRRVYSWPQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GF7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141409 for 3161 contacts (-44.7/contact) +
2D Compatibility (PS) -37287 + (NN) -3577 + (LL) 2464
1D Compatibility (HY) -7200 + (ID) 3400
Total energy: -190409.0 ( -60.24 by residue)
QMean score : 0.352
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