Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHWPGTNEAVMVDTWKGMEDLYKNNKAKNIGVSNFEPEHLEALLAQVSIKPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPLMNAQ--ILNDETIKDIAQELGKSPAQVVLRWNVQHGVVIIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKTFEG
1M9H Chain:A ((10-262))
-------DGNSIPQLGYGVYKVPP-ADTQRAVEEALEVGYRHIDTAAIYGNEE----GVGAAIAASGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVHWPTPAADNYVHAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHDVKIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLRWHLQKGFVVFPGSVRREHLEENLDVFDFDLTDTEIAAIDAMD--------------
General information:
TITO was launched using:
RESULT:
Template:
1M9H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106861 for 2166 contacts (-49.3/contact) +
2D Compatibility (PS) -27182 + (NN) -12106 + (LL) 1116
1D Compatibility (HY) -20400 + (ID) 5150
Total energy: -170583.0 ( -78.75 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1M9H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M9H-query.scw
PDB file :
Tito_Scwrl_1M9H.pdb
: