Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
2CDN Chain:A ((21-191))
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEV-----------
General information:
TITO was launched using:
RESULT:
Template:
2CDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51487 for 1294 contacts (-39.8/contact) +
2D Compatibility (PS) -18505 + (NN) -11709 + (LL) 2092
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -100659.0 ( -77.79 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2CDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDN-query.scw
PDB file :
Tito_Scwrl_2CDN.pdb
: