Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVI--SGGLTTVELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARMSEDTKALFVPQEEAKPQPKEIKQEEPKEVIQKVVEVNTNTKSTEKKLRAMKVIDLRKLAYTLDNVPIPKSKIKYANKDKLVHALKDIYGRSEN
4RBV Chain:A ((9-101))
--QEALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGGSGGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKIL---------PKGIS-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4RBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52981 for 704 contacts (-75.3/contact) +
2D Compatibility (PS) -9614 + (NN) -1040 + (LL) 5984
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -66201.0 ( -94.04 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4RBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RBV-query.scw
PDB file :
Tito_Scwrl_4RBV.pdb
: