Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF--VTHSKNGY-YDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
3RDD Chain:A ((37-161))
-----------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK---------------------------TEWLDGKHVVFGKVKEGMNIVEAM-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3RDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43741 for 906 contacts (-48.3/contact) +
2D Compatibility (PS) -12806 + (NN) -7155 + (LL) 4908
1D Compatibility (HY) -10400 + (ID) 3350
Total energy: -72544.0 ( -80.07 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3RDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RDD-query.scw
PDB file :
Tito_Scwrl_3RDD.pdb
: