Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1IF2 Chain:A ((6-251))
--QPIAAANWKCNGTTASIEKLVQVFNEHTISHD-VQCVVAPTFVHIPLVQAKLRNPKYVISAQNA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFRDIIDATR
General information:
TITO was launched using:
RESULT:
Template:
1IF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97419 for 2089 contacts (-46.6/contact) +
2D Compatibility (PS) -27013 + (NN) -13962 + (LL) 688
1D Compatibility (HY) -17200 + (ID) 5250
Total energy: -160156.0 ( -76.67 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1IF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IF2-query.scw
PDB file :
Tito_Scwrl_1IF2.pdb
: