Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDT---------HVEIDFMVVSSYHGGTTSSGEVKILKDVD-TNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
4RAN Chain:C ((30-209))
----DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLK-------------VIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAK
General information:
TITO was launched using:
RESULT:
Template:
4RAN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124096 for 1227 contacts (-101.1/contact) +
2D Compatibility (PS) -17183 + (NN) -4174 + (LL) 408
1D Compatibility (HY) -19600 + (ID) 2650
Total energy: -167295.0 ( -136.34 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4RAN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RAN-query.scw
PDB file :
Tito_Scwrl_4RAN.pdb
: