Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMAS-R-ADVSLAKDLQDTLHANQNYCVGMAANMIGSLKRVIIINVG-----ITNLVMFNPVLVAKSDPYETEESCLSLVG-C-RSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
1V3Y Chain:A ((1-155))
MVYPIRLYGDPVLRRKARPVEDFSGIKRLAEDMLETMFEA--KGVGLAAPQIGLSQRLFVAVE-LRELVRRVYVVANPVITYREGLVEGTEG-LSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILF
General information:
TITO was launched using:
RESULT:
Template:
1V3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72776 for 1022 contacts (-71.2/contact) +
2D Compatibility (PS) -13181 + (NN) 4513 + (LL) -76
1D Compatibility (HY) -7600 + (ID) 2050
Total energy: -91170.0 ( -89.21 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1V3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V3Y-query.scw
PDB file :
Tito_Scwrl_1V3Y.pdb
: