Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHYQTIIIGAGAAGIGFGSAMQRLGL-TNFLIIEKGHIGESFLRWPRTTQFITPSFTTNGFGFPDLNAVIPDTSPAFSFEKEHLSGVEYARYLQLVAAHYNLPIQNETSVLSIDKRDSLFVIKTS-KGDFSADYLIMATGEFQNPNT-IDIKGADL-GMHYGQVDNFHI-----KSDNPFIIIGGNESACDALTHLVYLGNQVELYTDTFGRKESNPDPSISLSPLTKERLKHIQDHKKEYYSISEGKKAIEIKQIGKQYQVTFDDGSTAESFHKPILSTGFLNTCHLIDGIA-LFEYDKNQLPIVTEDDESTIVNNCFLIGPSLRQRDTIF------CYIYKFRQRFVPVINHIAQREGIILDEDTLEFFKENQMYLDNLACCDVNCDC |
| 2GQW Chain:A ((6-309)) | -LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-Y-DRPPLSKD-------------------------FM------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHT--VALSDGRTLPYGTLVLATGA--APRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA------APATLADFVARYHAA--QGVDLRFERSVTGSVDG----VVLLDDGTR-IAADMVVVGIGVLANDAL--ARAAGLAC--DDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155316 for 2353 contacts (-66.0/contact) +
2D Compatibility (PS) -30006 + (NN) -1088 + (LL) 2208
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -191002.0 ( -81.17 by residue)
QMean score : 0.392
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