Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAISTFAPQKNVQLELE
4J5Y Chain:D ((6-70))----SLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNT-VSQMVYKHAISTVVPSRPVRL---


General information:
TITO was launched using:
RESULT:

Template: 4J5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 229 -40351 -176.21 -620.78
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain D : 0.85

3D Compatibility (PKB) : -176.21
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.505

(partial model without unconserved sides chains):
PDB file : Tito_4J5Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J5Y-query.scw
PDB file : Tito_Scwrl_4J5Y.pdb: